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Fern_plastome_list

Here is a list of fern plastomes published in genbank. You can downoad the csv from bottom of page. The list includes complete plastomes as well as fragments greater than 10 kb. This list is based on a search using a Biopython script written by Carol Rowe and Paul Wolf, then rewritten in R by Tanner Robison Sept 2018.

Please email me at paul.wolf@usu.edu if you want me to add taxa "in progress", or if you know of GenBank entries that are not listed below, or you want email notification of updates. Thanks.

Last updated 26 August 2018: 93 plastomes
         Species                                                Accession                                     URL

Plastomes in progress
By Jeff Mower, University of Nebraska, Lincoln:
Thelypteris palustris
Vittaria appalachiana
Osmunda regalis
Gleichenia dicarpa

By Fay-Wei Li and colleagues:
Callistopteris apiifolia
Dipteris conjugata
Hymenophyllum holochilum

Jin_mei Lu and collaborators are working on 250+ plastomes in Polypodiales
plus filling in gaps from currently unsampled fern families. 

By Amanda Grusz and Eric Schuettpelz, Smithsonian Institution
Acrostichum danaeifolium
Adiantum capillus-veneris
Adiantum macrophyllum
Adiantum tricholepis
Adiantum aleuticum
Anogramma chaerophylla
Antrophyum semicostatum
Bommeria hispida
Calciphilopteris ludens
Ceratopteris cornuta
Cheilanthes bolborrhiza
Cheilanthes micropteris
Cryptogramma acrostichoides
Haplopteris elongata
Hemionitis subcordata
Jamesonia brasiliensis
Llavea cordifolia
Myriopteris covillei
Myriopteris scabra
Notholaena standleyi
Onychium japonicum
Pellaea truncata
Pentagramma triangularis
Pityrogramma trifoliata
Pteris propinqua
Pteris dimidiata
Pteris vittata
Rheopteris cheesmaniae
Scoliosorus ensiformis
Tryonia myriophylla
Vaginularia trichoidea
Vittaria graminifolia

Page hits since Oct 2017:conter12
ċ
all_fern_plastomes.csv
(7k)
Paul Wolf,
Sep 11, 2018, 12:03 PM