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Fern_plastome_list

Here is a list (comma separated) of fern (moniliform) plastomes published in genbank. You can downoad the csv from bottom of page. The list includes complete plastomes as well as fragments greater than 10 kb.

Please email me at paul.wolf@usu.edu if you want me to add taxa "in progress", or if you know of GenBank entries that are not listed below, or you want email notification of updates. Thanks.

Last updated 4 Sept 2017: 78 plastomes (35 new ones from Wei et al. Genome Biol Evol 9: 1646-1657)

Taxon,Accession
Actinostachys pennula,KU764518
Adiantum capillus-veneris, NC_004766
Alsophila spinulosa ,NC_012818
Ampelopteris elegans,1236178171
Angiopteris angustifolia, NC_026300
Angiopteris evecta, NC_008829
Asplenium pekinense,1236178349
Asplenium prolongatum,1236178438
Athyrium anisopterum, KY419703
Athyrium anisopterum,1238821723
Athyrium opacum,1236178704
Athyrium sheareri,1236178260
Athyrium sinense,1236178526
Austroblechnum melanocaulon,1236178615
Azolla caroliniana, KC626076
Botrychium ternatum, KM817789.2
Ceratopteris richardii, KM052729
Cheilanthes lindheimeri, NC_014592
Cyclosorus procerus,1236178793
Cyrtomium devexiscapulae, NC_028542
Cyrtomium falcatum, NC_028705
Cystopteris chinensis,1236178882
Cystopteris protrusa, KP136830
Deparia lancea,1236178971
Deparia pycnosora,1236179060
Deparia viridifrons,1236179149
Dicksonia antarctica (fragment), HM021802
Dicksonia squarrosa, KJ569698
Diplaziopsis cavaleriana,1236179238
Diplaziopsis javanica,1236179326
Diplazium bellum,1236179415
Diplazium dilatatum,1236179504
Diplazium dushanense,1236179593
Diplazium striatum,1236179682
Diplazium unilobum,1236179771
Diplopterygium glaucum, NC_024158
Dipteris conjugata, KP136829
Drynaria roosii, KY075853
Dryopteris decipiens,1236179855
Dryopteris fragrans, KX418656
Equisetum arvense (fragment), HQ658110
Equisetum arvense (Korea), JN968380
Equisetum arvense (USA), NC_014699
Equisetum hyemale, NC_020146
Equisetum hyemale (fragment), KC610090
Equisetum ramosissimum (fragment), HQ658109
Gleichenia japonica (fragment), HM021798
Helminthostachys zeylanica,KM817788.2
Homalosorus pycnocarpos,1236179944
Hymenasplenium unilaterale,1236180033
Hypodematium crenatum,1236180121
Lepisorus clathratus, KY419704
Lepisorus clathratus,1238821811
Lygodium japonicum, NC_022136
Macrothelypteris torresiana,1236180210
Mankyua chejuensis, NC_017006
Marsilea crenata, NC_022137
Marsilea mutica (fragment), HM021801
Matteuccia struthiopteris,1236180299
Onoclea sensibilis,1236180388
Ophioglossum californicum, NC_020147
Osmundastrum cinnamomeum, NC_024157
Osmundastrum cinnamomeum (fragment), HM021799
Plagiogyria formosana, KP136831
Plagiogyria japonica (fragment), HQ658099
Polypodium glycyrrhiza, KP136832
Psilotum nudum, NC_003386
Pteridium aquilinum subsp. aquilinum, NC_014348
Rhachidosorus consimilis,1236180566
Schizaea elegans,1129604556
Schizaea pectinata,1129604640
Stegnogramma sagittifolia,1236180655
Thelypteris aurita,1236180477
Tmesipteris elongata, KJ569699
Vandenboschia radicans (fragment), HM021800
Woodsia macrochlaena,1236180743
Woodsia polystichoides,1236180832
Woodwardia unigemmata, NC_028543 

Plastomes in progress
By Jeff Mower, University of Nebraska, Lincoln:
Thelypteris palustris
Vittaria appalachiana
Osmunda regalis
Gleichenia dicarpa

By Fay-Wei Li and colleagues:
Callistopteris apiifolia
Dipteris conjugata
Azolla caroliniana 140 
Azolla microphylla 
Azolla filiculoides
Azolla caroliniana 145   
Azolla nilotica     
Salvinia cucullata     
Azolla rubra
Hymenophyllum holochilum

By Amanda Grusz and Eric Schuettpelz, Smithsonian Institution
Acrostichum danaeifolium
Adiantum capillus-veneris
Adiantum macrophyllum
Adiantum tricholepis
Adiantum aleuticum
Anogramma chaerophylla
Antrophyum semicostatum
Bommeria hispida
Calciphilopteris ludens
Ceratopteris cornuta
Cheilanthes bolborrhiza
Cheilanthes micropteris
Cryptogramma acrostichoides
Haplopteris elongata
Hemionitis subcordata
Jamesonia brasiliensis
Llavea cordifolia
Myriopteris covillei
Myriopteris scabra
Notholaena standleyi
Onychium japonicum
Pellaea truncata
Pentagramma triangularis
Pityrogramma trifoliata
Pteris propinqua
Pteris dimidiata
Pteris vittata
Rheopteris cheesmaniae
Scoliosorus ensiformis
Tryonia myriophylla
Vaginularia trichoidea
Vittaria graminifolia

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fern_plastomes_genbank.csv
(3k)
Paul Wolf,
Sep 4, 2017, 6:09 PM